MorphoNet Tutorials

We present here 3 different tutorials using MorphoNet.

You can just click on each link to visualize each tutorial as web page or download the notebooks from this archive and run it with jupyter.

Tutorial 1 : Investigation on shape changes of endodermal cells during gastrulation in Phallusia mammillata embryos

Part 1: Dataset creation

Part 2: Shape analysis during gastrulation

Tutorial 2 : Export data from ImageJ/Fiji to MorphoNet

How to use the MorphoNet Plugin on Image

Tutorial 3 : Interactive 3d segmentation and cell tracking with MorphoNet

Segment and tracks cells in 4D images